In vivo, in silico effects of sakuranetin as a multi-target nutraceutical against PTZ-induced seizures via GABA restoration and BDNF/TrkB activation

in-vivo,-in-silico-effects-of-sakuranetin-as-a-multi-target-nutraceutical-against-ptz-induced-seizures-via-gaba-restoration-and-bdnf/trkb-activation
In vivo, in silico effects of sakuranetin as a multi-target nutraceutical against PTZ-induced seizures via GABA restoration and BDNF/TrkB activation

Scientific Reports , Article number:  (2025) Cite this article

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Abstract

Current antiepileptic drugs are effective in suppressing motor seizures; however, they often do not address the underlying factors such as oxidative stress, inflammation, and neurotrophic imbalances that contribute to the development of epilepsy. Recently, flavonoids sourced from diet have attracted attention as neuromodulators that can target these root causes. This study evaluated the protective effects of sakuranetin—a flavonoid found in edible Prunus species—against pentylenetetrazole (PTZ)-induced seizures and neurochemical changes in mice. Swiss albino mice (n = 6/group) were treated with saline, PTZ (35 mg/kg, intraperitoneally), or PTZ combined with sakuranetin (10 or 20 mg/kg, orally) every other day for 28 days. The study assessed seizure activity, oxidative stress markers, inflammatory cytokines, brain-derived neurotrophic factor (BDNF), tropomyosin receptor kinase B (TrkB), and caspase-3 activity. Additionally, in silico docking and 100 ns molecular dynamics simulations were performed to investigate sakuranetin’s interactions with BDNF, TrkB, and D₂-like receptors. The results showed that sakuranetin treatment significantly improved seizure parameters. The onset latency was extended with both doses. The duration of clonic–tonic seizures was reduced by half, and mortality rates dropped from 50% to 8%. PTZ-induced reductions in neurotransmitters (such as GABA, dopamine, norepinephrine, serotonin, and acetylcholine) were restored, antioxidant defenses (including superoxide dismutase, catalase, and glutathione) were enhanced, and both lipid peroxidation (measured by malondialdehyde) and nitrosative stress (nitric oxide) were significantly decreased. Pro-inflammatory cytokines (IL-1β, IL-6, TNF-α) were reduced, BDNF and TrkB levels approached control levels, and caspase-3 activity was diminished. Docking studies and MM-GBSA analyses indicated that BDNF was the most favorable binding partner for sakuranetin (with a binding free energy of approximately − 57 kcal/mol), and the simulations affirmed the stability of the complex. These findings suggest that sakuranetin has substantial, multi-target anticonvulsant effects by restoring neurotransmitter balance, enhancing antioxidant capacity, suppressing neuroinflammation, and revitalizing BDNF/TrkB signaling. Given its dietary origin, sakuranetin warrants further investigation as a potential nutraceutical candidate for managing epilepsy.

Data availability

The data that support the findings of this study are available from the corresponding author upon reasonable request.

References

  1. Chen, Z. et al. Editorial: epidemiology of epilepsy and seizures. Front. Epidemiol. 3, 1273163 (2023).

    Google Scholar 

  2. Hossain, M. S. et al. Dietary phytochemicals in health and disease: Mechanisms, clinical Evidence, and Applications-A comprehensive review. Food Sci. Nutr. 13 (3), e70101 (2025).

    Google Scholar 

  3. Sharma, P., Dhiman, P. & Singh, D. Dietary flavonoids-rich citrus reticulata Peel extract interacts with CREB signaling to suppress seizures and linked neurobehavioral impairments in a kindling mouse model. Nutr. Neurosci. 26 (7), 582–593 (2023).

    Google Scholar 

  4. Hansen, S. L., Sperling, B. B. & Sánchez, C. Anticonvulsant and antiepileptogenic effects of GABAA receptor ligands in pentylenetetrazole-kindled mice. Prog Neuropsychopharmacol. Biol. Psychiatry. 28 (1), 105–113 (2004).

    Google Scholar 

  5. Flynn, J. M. & Melov, S. SOD2 in mitochondrial dysfunction and neurodegeneration. Free Radic Biol. Med. 62, 4–12 (2013).

    Google Scholar 

  6. Villalón-García, I. et al. Vicious cycle of lipid peroxidation and iron accumulation in neurodegeneration. Neural Regen Res. 18 (6), 1196–1202 (2023).

    Google Scholar 

  7. Stompor, M. A review on sources and Pharmacological aspects of Sakuranetin. Nutrients, 12(2). (2020).

  8. Kamat, C. D. et al. Antioxidants in central nervous system diseases: preclinical promise and translational challenges. J. Alzheimers Dis. 15 (3), 473–493 (2008).

    Google Scholar 

  9. Domínguez-Rodríguez, G. et al. Composition of nonextractable polyphenols from sweet Cherry pomace determined by DART-Orbitrap-HRMS and their in vitro and in vivo potential Antioxidant, Antiaging, and neuroprotective activities. J. Agric. Food Chem. 70 (26), 7993–8009 (2022).

    Google Scholar 

  10. Stagni, F. et al. A flavonoid agonist of the TrkB receptor for BDNF improves hippocampal neurogenesis and hippocampus-dependent memory in the Ts65Dn mouse model of DS. Exp. Neurol. 298 (Pt A), 79–96 (2017).

    Google Scholar 

  11. Hernández-del Caño, C. et al. Neurotrophins and their receptors: bdnf’s role in GABAergic neurodevelopment and disease. Int. J. Mol. Sci. 25 (15), 8312 (2024).

    Google Scholar 

  12. Alharbi, K. S. et al. Effect of Sakuranetin against cyclophosphamide-induced Immunodeficiency Mice: Role of IFN. 1–12 (Naunyn-Schmiedeberg’s Archives of Pharmacology, 2025). -γ/TNF-α/IgG/IgM/interleukins.

  13. Pires, D. E., Blundell, T. L. & Ascher, D. B. PkCSM: predicting Small-Molecule Pharmacokinetic and toxicity properties using Graph-Based signatures. J. Med. Chem. 58 (9), 4066–4072 (2015).

    Google Scholar 

  14. Vicente-Silva, W. et al. Sakuranetin exerts anticonvulsant effect in bicuculline‐induced seizures. Fundam. Clin. Pharmacol. 36 (4), 663–673 (2022).

    Google Scholar 

  15. Sakoda, C. P. P. et al. Sakuranetin reverses vascular peribronchial and lung parenchyma remodeling in a murine model of chronic allergic pulmonary inflammation. Acta Histochem. 118 (6), 615–624 (2016).

    Google Scholar 

  16. Long, Z. et al. Sakuranetin prevents Acetaminophen-Induced liver injury via Nrf2-Induced Inhibition of hepatocyte ferroptosis. Drug Des. Devel Ther. 19, 159–171 (2025).

    Google Scholar 

  17. Van Erum, J., Van Dam, D. & De Deyn, P. P. PTZ-induced seizures in mice require a revised Racine scale. Epilepsy Behav. 95, 51–55 (2019).

    Google Scholar 

  18. Goel, R. & Saxena, P. Pycnogenol protects against Pentylenetetrazole-Induced oxidative stress and seizures in mice. Curr. Clin. Pharmacol. 14 (1), 68–75 (2019).

    Google Scholar 

  19. González-Trujano, M. E. et al. Pharmacological and toxicological effects of Ruta chalepensis L. on experimentally induced seizures and electroencephalographic spectral power in mice. J. Ethnopharmacol. 271, 113866 (2021).

    Google Scholar 

  20. Dunham, N. & Miya, T. A note on a simple apparatus for detecting neurological deficit in rats and mice. (1957).

  21. Shelke, M. et al. Drug degradation Prediction, in Silico toxicity assessment and development of Stability-Indicating, quality by design enabled UFLC method for Sacubitril-Valsartan. Russ. J. Bioorg. Chem. 49 (3), 664–681 (2023).

    Google Scholar 

  22. Awathale, S. N. et al. Denial of food to the hungry rat: a novel paradigm for induction and evaluation of anger-like emotion. J. Neurosci. Methods. 341, 108791 (2020).

    Google Scholar 

  23. Misra, H. P. & Fridovich, I. The role of superoxide anion in the autoxidation of epinephrine and a simple assay for superoxide dismutase. J. Biol. Chem. 247 (10), 3170–3175 (1972).

    Google Scholar 

  24. Gl, E. Tissue sulfhydryl groups. Arch. Biochem. Biophys. 82, 70–77 (1959).

    Google Scholar 

  25. Aebi, H. [13] Catalase in vitro, in Methods in Enzymology. 121–126 (Elsevier, 1984).

  26. Hu, M. et al. Antiepileptic effects of Protein-Rich extract from Bombyx batryticatus on mice and its protective effects against H(2)O(2)-Induced oxidative damage in PC12 cells via regulating PI3K/Akt signaling pathways. Oxid. Med. Cell. Longev. 2019, 7897584 (2019).

    Google Scholar 

  27. Javaid, S. et al. Tiagabine suppresses pentylenetetrazole-induced seizures in mice and improves behavioral and cognitive parameters by modulating BDNF/TrkB expression and neuroinflammatory markers. Biomed. Pharmacother. 160, 114406 (2023).

    Google Scholar 

  28. Kandeda, A. K. et al. Aqueous extract of Parkia Biglobosa (Jacq.) R. Br. (Fabaceae) exerts antiepileptogenic, anti-amnesic, and anxiolytic-like effects in mice via mechanisms involving antioxidant and anti-inflammatory pathways. Front. Pharmacol. 13, 995881 (2022).

    Google Scholar 

  29. Pourshadi, N. et al. Anticonvulsant effects of thalidomide on Pentylenetetrazole-Induced seizure in mice: A role for opioidergic and nitrergic transmissions. Epilepsy Res. 164, 106362 (2020).

    Google Scholar 

  30. Putra, M. et al. Fyn-tau ablation modifies PTZ-Induced seizures and Post-seizure hallmarks of early epileptogenesis. Front. Cell. Neurosci. 14, 592374 (2020).

    Google Scholar 

  31. Rahimi, N. et al. The possible role of nitric oxide signaling and NMDA receptors in allopurinol effect on maximal electroshock- and pentylenetetrazol-induced seizures in mice. Neurosci. Lett. 778, 136620 (2022).

    Google Scholar 

  32. Bowers, K. J. et al. Scalable algorithms for molecular dynamics simulations on commodity clusters. In Proceedings of the 2006 ACM/IEEE Conference on Supercomputing. (2006).

  33. Chow, E. et al. Desmond performance on a cluster of multicore processors. Simulation 1, 1–14 (2008).

    Google Scholar 

  34. Shivakumar, D. et al. Prediction of absolute solvation free energies using molecular dynamics free energy perturbation and the OPLS force field. J. Chem. Theory Comput. 6 (5), 1509–1519 (2010).

    Google Scholar 

  35. Jorgensen, W. L. et al. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79 (2), 926–935 (1983).

    Google Scholar 

  36. Martyna, G. J., Tobias, D. J. & Klein, M. L. Constant pressure molecular dynamics algorithms. J. Chem. Phys. 101 (5), 4177–4189 (1994).

    Google Scholar 

  37. Martyna, G. J., Klein, M. L. & Tuckerman, M. Nosé–Hoover chains: the canonical ensemble via continuous dynamics. J. Chem. Phys. 97 (4), 2635–2643 (1992).

    Google Scholar 

  38. Toukmaji, A. Y. & Board, J. A. Jr Ewald summation techniques in perspective: a survey. Comput. Phys. Commun. 95 (2–3), 73–92 (1996).

    Google Scholar 

  39. Nagib, M. M. et al. Ameliorative effects of α-tocopherol and/or coenzyme Q10 on phenytoin-induced cognitive impairment in rats: role of VEGF and BDNF-TrkB-CREB pathway. Neurotox. Res. 35, 451–462 (2019).

    Google Scholar 

  40. Abdel-Salam, O. M. et al. Capsaicin exerts anti-convulsant and neuroprotective effects in pentylenetetrazole-induced seizures. Neurochem. Res. 45 (5), 1045–1061 (2020).

    Google Scholar 

  41. Akyuz, E. et al. Revisiting the role of neurotransmitters in epilepsy: an updated review. Life Sci. 265, 118826 (2021).

    Google Scholar 

  42. Ali, S. O. et al. Therapeutic potential of endothelial progenitor cells in a rat model of epilepsy: role of autophagy. J. Adv. Res. 18, 101–112 (2019).

    Google Scholar 

  43. Szyndler, J. et al. Time course of changes in the concentrations of monoamines in the brain structures of pentylenetetrazole-kindled rats. J. Neural Transm. 117 (6), 707–718 (2010).

    Google Scholar 

  44. Roganovic, M., Pantovic, S. & Dizdarevic, S. Role of the oxidative stress in the pathogenesis of epilepsy. Brain 1 (3), 1–10 (2019).

    Google Scholar 

  45. Geronzi, U., Lotti, F. & Grosso, S. Oxidative stress in epilepsy. Expert Rev. Neurother. 18 (5), 427–434 (2018).

    Google Scholar 

  46. Ahmet, A. & Bilal, S. Evaluation of oxidative stress parameters in liver in pentylenetetrazole-induced acute and chronic epilepsy model in rats. Am. J. Biomed. Sci. Res. 6, 2019–2024 (2019).

    Google Scholar 

  47. Pracucci, E. et al. Neuroinflammation: a signature or a cause of epilepsy? Int. J. Mol. Sci. 22 (13), 6981 (2021).

    Google Scholar 

  48. Fabisiak, T. & Patel, M. Crosstalk between neuroinflammation and oxidative stress in epilepsy. Front. cell. Dev. Biology. 10, 976953 (2022).

    Google Scholar 

  49. Chen, F., Peng, T. & Gou, M. Conessine alleviates PTZ-induced epilepsy in rat model via attenuating neuroinflammation and oxidative stress. Arab. J. Chem. 17 (12), 106009 (2024).

    Google Scholar 

  50. Yıldızhan, K., Güneş, H. & Taşkıran, A. Effect of Anakinra and Infliximab on oxidative stress and caspase activation in PTZ-Induced acute seizure in rats. Eastern J. Med. 28(1), 75–81 (2023).

  51. Boulle, F. et al. TrkB Inhibition as a therapeutic target for CNS-related disorders. Prog. Neurobiol. 98 (2), 197–206 (2012).

    Google Scholar 

  52. Feng, J., Feng, L. & Zhang, G. Mitochondrial damage in hippocampal neurons of rats with epileptic protein expression of Fas and caspase-3. Experimental Therapeutic Med. 16 (3), 2483–2489 (2018).

    Google Scholar 

  53. Genheden, S. & Ryde, U. The MM/PBSA and MM/GBSA methods to estimate ligand-binding affinities. Expert Opin. Drug Discov. 10 (5), 449–461 (2015).

    Google Scholar 

  54. Wang, C. et al. Recent developments and applications of the MMPBSA method. Front. Mol. Biosci. 4, 87 (2018).

    Google Scholar 

  55. Lyne, P. D., Lamb, M. L. & Saeh, J. C. Accurate prediction of the relative potencies of members of a series of kinase inhibitors using molecular Docking and MM-GBSA scoring. J. Med. Chem. 49 (16), 4805–4808 (2006).

    Google Scholar 

  56. Hanrahan, J. R., Chebib, M. & Johnston, G. A. R. Flavonoid modulation of GABAA receptors. Br. J. Pharmacol. 163 (2), 234–245 (2011).

    Google Scholar 

  57. Fang, M. et al. Advances in Understanding the pathogenesis of post-traumatic epilepsy: a literature review. Front. Neurol. 14, 1141434 (2023).

    Google Scholar 

  58. Toledo, A. et al. Flavonone treatment reverses airway inflammation and remodelling in an asthma murine model. Br. J. Pharmacol. 168 (7), 1736–1749 (2013).

    Google Scholar 

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Acknowledgements

This research has been funded by the Scientific Research Deanship at the University of Ha’il – Saudi Arabia through project number RG-23 079.

Funding

This research has been funded by the Scientific Research Deanship at the University of Ha’il – Saudi Arabia through project number RG-23 079.

Author information

Authors and Affiliations

  1. Department of Pharmaceutics, College of Pharmacy, University of Ha’il, Ha’il, 81442, Saudi Arabia

    Rahamat Unissa Syed

  2. Department of Clinical Nutrition, College of Applied Medical Sciences, University of Ha’il, Ha’il, Kingdom of Saudi Arabia

    Humera Banu

  3. Department of Pharmaceutical Chemistry, College of Pharmacy, University of Ha’il, Ha’il, 81442, Saudi Arabia

    Weam M. A. Khojali

  4. Department of Clinical Pharmacy, College of Pharmacy, University of Ha’il, Ha’il, Saudi Arabia

    Mhdia Elhadi Osman

  5. College of Pharmacy, University of Ha’il, Ha’il, 81442, Saudi Arabia

    Amal Mohammad Alrashidi

  6. College of Medicine, King Khalid University, Abha, 62529, Saudi Arabia

    Lama Nasser

  7. Consultant Internal Medicine, King Salman Specialist Hospital, Ha’il, Saudi Arabia

    Huda Alzubir

  8. Specialist of Clinical Immunology and Allergy, King Salman Specialist Hospital, Ha’il, Saudi Arabia

    Amira Ibrahim Mohammed Ahmed Alfaki

  9. Department of Chemistry, College of Science, University of Ha’il, Ha’il, 81442, Saudi Arabia

    Najat Masood

  10. Department of Pharmacology, College of Pharmacy, University of Ha’il, Ha’il, 81442, Saudi Arabia

    Gehad M Subaiea

  11. Faculty of Health and Life Sciences, INTI International University, Nilai, 71800, Malaysia

    Ling Shing Wong

  12. Department of Parasitology and Medical Entomology, Faculty of Medicine, Universiti Kebangsaan Malaysia, Jalan Yaacob Latif, Cheras, Kuala Lumpur, 56000, Malaysia

    Vinoth Kumarasamy

  13. Department of Medical Sciences, School of Medical and Life Sciences, Sunway University Jalan University, Bandar Sunway, Darul Ehsan, 47500, Selangor, Malaysia

    Vetriselvan Subramaniyan

Authors

  1. Rahamat Unissa Syed
  2. Humera Banu
  3. Weam M. A. Khojali
  4. Mhdia Elhadi Osman
  5. Amal Mohammad Alrashidi
  6. Lama Nasser
  7. Huda Alzubir
  8. Amira Ibrahim Mohammed Ahmed Alfaki
  9. Najat Masood
  10. Gehad M Subaiea
  11. Ling Shing Wong
  12. Vinoth Kumarasamy
  13. Vetriselvan Subramaniyan

Contributions

RUS, HB, and WMAK performed the behavioural experiments, data curation, formal analysis and edited the manuscript. MEO, AMA, LN, and HA contributed to the confocal analysis. AIMAA, NM, and GS reviewed and edited the manuscript. LSW, VK, and VS were responsible for the conceptualization, experimental design, data curation, formal analysis, funding acquisition, investigation, methodology, project administration, supervision, validation, visualization, and manuscript writing (original draft, review, and editing). All authors have read and agreed to the published version of the manuscript.

Corresponding authors

Correspondence to Rahamat Unissa Syed or Vinoth Kumarasamy.

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Competing interests

The authors declare no competing interests.

Conflict of interest

The authors declare no conflict of interest, financial or otherwise.

Ethics approval and consent to participate

The Kingdom of Saudia Arabia, Ministry of Education, University of Hail, and Research Ethics Committee, following ARRIVE guidelines, approved the experiment (H-2025-583; Jan 21, 2025).

Human and animal rights

All procedures performed in this study involving animals were conducted following national ethical standards for the protection of animals used for scientific purposes.

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Syed, R.U., Banu, H., Khojali, W.M.A. et al. In vivo, in silico effects of sakuranetin as a multi-target nutraceutical against PTZ-induced seizures via GABA restoration and BDNF/TrkB activation. Sci Rep (2025). https://doi.org/10.1038/s41598-025-26746-y

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