Engineered Un1Cas12f1 for multiplex genome editing with enhanced activity and targeting scope

engineered-un1cas12f1-for-multiplex-genome-editing-with-enhanced-activity-and-targeting-scope
Engineered Un1Cas12f1 for multiplex genome editing with enhanced activity and targeting scope

Data availability

The NGS data generated in this study have been deposited in the NCBI Sequence Read Archive (SRA) database under the accession codes: PRJNA1310035, PRJNA1310152, PRJNA1310189, PRJNA1310199, PRJNA1310212, PRJNA1310251, PRJNA1372820, PRJNA1372987.ClinVar database (ClinVar (nih.gov)) was used to identify pathogenic SNVs that can be correct by base editing. The published structure of Un1Cas12f1 (PDB ID: 7C7L) can be accessed at the RCSB Protein Data Bank (PDB) 7C7L: Cryo-EM structure of the Cas12f1-sgRNA-target DNA complex. There are no restrictions on data availability. Source data are provided with this paper.

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Acknowledgements

We thank Y. Zhang from the Flow Cytometry Core Facility of School of Life Sciences at ECNU and support from the ECNU Public Platform for innovation (011). This work was partially supported by grants from the National Key R&D Program of China (2023YFE0209200 and 2023YFC3403400 to D.L., 2022YFC3400200 to Y.G.), National Natural Science Foundation of China (32025023, 32230064 and 32311530111 to D.L., U24A20677 to L.W.), the Agriculture Science and Technology Major Project, Innovation Program of Shanghai Municipal Education Commission (2025GDZKZD03 to D.L.), Shanghai Municipal Commission for Science and Technology (24J22800400 to D.L.).D.L. is a Shanghai Academy of Natural Sciences Exploration Scholar.

Author information

Author notes

  1. These authors contributed equally: Yanan Huo, Jiale Mei, Dan Zhang.

Authors and Affiliations

  1. Shanghai Frontiers Science Center of Genome Editing and Cell Therapy, Shanghai Key Laboratory of Regulatory Biology, School of Life Sciences, East China Normal University, Shanghai, China

    Yanan Huo, Jiale Mei, Dan Zhang, Bing Yan, Chao Dong, Shuming Yin, Meizhen Liu, Xinyan Wang, Dan Chen, Yuting Guan, Gaojie Song, Bing Du, Dali Li & Liren Wang

  2. Department of Urology, Children’s Hospital of Fudan University, Shanghai, China

    Dexin Zhang

  3. Shanghai Engineering Research Center of Industrial Microorganisms, Shanghai, China

    Yongming Wang

  4. Department of Biomedical Sciences and Tung Biomedical Sciences Centre, City University of Hong Kong, Kowloon, Hong Kong, SAR, China

    Zongli Zheng

  5. Department of Dermatology, Xiangya Hospital & School of Life Sciences & Furong Laboratory, Central South University, Changsha, China

    Hong Liu

  6. Shanghai Academy of Natural Sciences (SANS), Shanghai, China

    Dali Li

  7. Hangzhou Institute of Medicine (HIM), Chinese Academy of Sciences, Hangzhou, 310018, China

    Lei Yang

Authors

  1. Yanan Huo
  2. Jiale Mei
  3. Dan Zhang
  4. Bing Yan
  5. Dexin Zhang
  6. Chao Dong
  7. Shuming Yin
  8. Meizhen Liu
  9. Xinyan Wang
  10. Dan Chen
  11. Yuting Guan
  12. Gaojie Song
  13. Bing Du
  14. Yongming Wang
  15. Zongli Zheng
  16. Hong Liu
  17. Dali Li
  18. Lei Yang
  19. Liren Wang

Contributions

Y.H., L.W., L.Y., and D.L. conceived the rational engineering of Un1Cas12f1. Y.H., L.W., and D.C. performed the experiments of Un1Cas12f1 mutation library construction. Y.H., L.W., and J.M. performed the experiments of bacterial positive selection assay. Y.H., J.M., B.Y. performed the experiments of plasmid construction, cell culture, cell transfection, cell sorting, and genomic DNA preparation. Y. H. and J. M. performed the experiments of PCR, reverse transcription, qPCR and prepared the HTS libraries. L.W., X.W., and Dan Zhang performed computational analysis. Y.H., C.D., and S.Y. performed the experiments of lentiviral vector production and the creation of stable cell lines. Y.H., J.M., Dexin Zhang and M.L. performed the animal experiments. G.S. performed the structural analysis. L.W., Y.H., L.Y., D.L., Y.G., B.D., Y.W., H.L., and Z.Z. designed the experiments and wrote the manuscript with the input from all the authors. D.L., L.Y., and L.W. supervised the study.

Corresponding authors

Correspondence to Dali Li, Lei Yang or Liren Wang.

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Competing interests

D.L., L.W, Y.H., J.M, L.Y, and Dan Zhang have submitted patent applications (application number CN 202510015341.4, under review) based on the results reported in this study. This patent mainly relates to evoCas12f in this paper. The remaining authors declare no competing interests.

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Huo, Y., Mei, J., Zhang, D. et al. Engineered Un1Cas12f1 for multiplex genome editing with enhanced activity and targeting scope. Nat Commun (2026). https://doi.org/10.1038/s41467-026-69678-5

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  • DOI: https://doi.org/10.1038/s41467-026-69678-5