References
-
Ma, M., Taylor, P. W. J., Chen, D., Vaghefi, N. & He, J. Z. Major soilborne pathogens of field processing tomatoes and management strategies. Microorganisms 11, 263 (2023).
-
Ramudingana, P. et al. Antagonistic potential of endophytic fungal isolates of tomato (Solanum lycopersicum L.) fruits against post-harvest disease-causing pathogens of tomatoes: an in vitro investigation. Fungal Biol. 128, 1847–1858 (2024).
-
Bosmaia, T. C. et al. Transcriptomic analysis towards identification of defence-responsive genes and pathways upon application of sargassum seaweed extract on tomato plants infected with Macrophomina Phaseolina. 3 Biotech. 13, 179 (2023).
-
Khedia, J. et al. Sargassum seaweed extract enhances Macrophomina Phaseolina resistance in tomato by regulating phytohormones and antioxidative activity. J. Appl. Phycol. 32, 4373–4384 (2020).
-
Morales-Cedeño, L. R. et al. Plant growth-promoting bacterial endophytes as biocontrol agents of pre- and post-harvest diseases: Fundamentals, methods of application and future perspectives. Microbiol. Res. 242, 126612 (2021).
-
Kashyap, N. et al. Biocontrol screening of endophytes: applications and limitations. Plants 12, 2480–2480 (2023).
-
Ebrahimi, L., Hatami Rad, S. & Etebarian, H. R. Apple endophytic fungi and their antagonism against Apple scab disease. Front. Microbiol. 13, 1024001 (2022).
-
Kumar, A. Microbial biocontrol: food security and post-harvest management. (Springer Int. Publishing. https://doi.org/10.1007/978-3-030-87289-2 (2022).
-
Kumari, M. et al. Deciphering the role of endophytic Microbiome in postharvest diseases management of fruits: opportunity areas in commercial up-scale production. Front. Plant. Sci. 13, 1026575 (2022).
-
Pathak, P. et al. Plant-endophyte interaction during biotic stress management. Plants 11, 2203 (2022).
-
Aleahmad, P. & Ebrahimi, L. The possible applications of endophytic fungi. RJP 10, 81–94 (2023).
-
Bonaterra, A. et al. Bacteria as biological control agents of plant diseases. Microorganisms 10, 1759 (2022).
-
Djebaili, R. et al. Biocontrol of soil-borne pathogens of Solanum lycopersicum L. and Daucus Carota L. by plant growth-promoting actinomycetes: in vitro and in planta antagonistic activity. Pathogens 10, 1305–1305 (2021).
-
Montesdeoca-Flores, D. T. et al. Antifungal activity of Streptomyces spp. Extracts in vitro and on post-harvest tomato fruits against plant pathogenic fungi. Horticulturae 9, 1319–1319 (2023).
-
Elawady, M. E. et al. Bioactive metabolite from endophytic Aspergillus versicolor SB5 with anti-acetylcholinesterase, anti-inflammatory and antioxidant activities: in vitro and in Silico studies. Microorganisms 11, 1062–1062 (2023).
-
Zhang, L. et al. Effect of volatile compounds produced by the cotton endophytic bacterial strain Bacillus sp. T6 against verticillium wilt. BMC Microbiol. 23, 8 (2023).
-
Raaijmakers, J. M. & Mazzola, M. Diversity and natural functions of antibiotics produced by beneficial and plant pathogenic bacteria. Annu. Rev. Phytopathol. 50, 403–424 (2012).
-
Ayed, A. et al. Antifungal activity of volatile organic compounds from Streptomyces sp. strain S97 against Botrytis cinerea. Biocontrol Sci. Technol. 31, 1330–1348 (2021).
-
Corral, D. A. P. et al. Antagonistic effect of volatile and non-volatile compounds from Streptomyces strains on cultures of several phytopathogenic fungi. Emir j. Food agric. 32, 879–889 (2020).
-
Le, K. D. et al. Streptomyces sp. AN090126 as a biocontrol agent against bacterial and fungal plant diseases. Microorganisms 10, 791 (2022).
-
Prasannath, K. Plant defense-related enzymes against pathogens: a review. J. Agric. Sci. 11, 38 (2017).
-
Saravanakumar, K. et al. Cellulase from Trichoderma Harzianum interacts with roots and triggers induced systemic resistance to foliar disease in maize. Sci. Rep. 6, 35543 (2016).
-
Tran, M. L. et al. Isolation and properties of endophytic bacteria and actinomycetes of Catharanthus roseus (L) G. Don grown in Nha Trang, Vietnam. AJB 46, 71–82 (2024).
-
El-Akshar, E. A. et al. Endophytic chitinase and antifungal metabolites-producing actinobacteria for biological control of cucumber damping off disease. JPP 107, 469–490 (2024).
-
Lahmyed, H. et al. Actinomycete as biocontrol agents against tomato Gray mold disease caused by Botrytis cinerea. KJS 48 (3). https://doi.org/10.48129/kjs.v48i3.9200 (2021).
-
Yun, T. et al. Potential biocontrol of endophytic streptomyces sp. 5 – 4 against fusarium wilt of banana caused by fusarium oxysporum f. sp. cubense tropical race 4. Phytopathology 112, 1877–1885 (2022).
-
Villafañe, D. L., Maldonado, R. A., Rodríguez, E. & Chiesa, M. A. Endophytic Streptomyces sp. N2A protects soybean against fungal diseases through two distinct mechanisms. BioControl 15, 1–4 (2025).
-
Ebrahimi-Zarandi, M. et al. Exploring two Streptomyces species to control Rhizoctonia Solani in tomato. Agronomy 11, 1384–1384 (2021).
-
Lobiuc, A. et al. Future antimicrobials: natural and functionalized phenolics. Molecules 28, 1114 (2023).
-
Lanzuise, S. et al. Combined biostimulant applications of Trichoderma spp. With fatty acid mixtures improve biocontrol activity, horticultural crop yield and nutritional quality. Agronomy 12, 275 (2022).
-
Soliman, S. A., Khaleil, M. M. & Metwally, R. A. Evaluation of the antifungal activity of Bacillus amyloliquefaciens and B. velezensis and characterization of the bioactive secondary metabolites produced against plant pathogenic fungi. Biology 11, 1390 (2022).
-
Alves, D. et al. Exploring the phytochemicals of acacia melanoxylon R. Br. Plants. 10, 2698 (2021).
-
Thbayh, D. K., Palusiak, M., Viskolcz, B. & Fiser, B. Comparative study of the antioxidant capability of EDTA and Irganox. Heliyon 9, 16064–16064 (2023).
-
Bashandy, S. R., Mohamed, O. A., Abdalla, O. A., Elfarash, A. & Abd-Alla, M. H. Harnessing plant growth-promoting bacteria to combat watermelon mosaic virus in squash. Sci. Rep. 15, 9440 (2025).
-
Tariq, A., Salman, M., Ashraf, M. A., Bukhari, S. A. & Mustafa, G. Exploring synergistic effects of Pantoea agglomerans BCH-1 and Bacillus pseudomycoides BCH-3 to enhance maize adaptations under drought condition. J. Soil. Sci. Plant. Nutr. 25, 4747–4766 (2025).
-
Sharma, N., Yadav, G., koul, M., Joshi, N. C. & Mishra, A. Significance of secondary metabolites elicited by Zhihengliuella sp. ISTPL4 in plant growth promotion under arsenic stress. S Afr. J. Bot. 174, 383–392 (2024).
-
Ghanem, G. A. M. et al. Efficacy of antifungal substances of three Streptomyces spp. Against different plant pathogenic fungi. Egypt. J. Biol. Pest Control. 32, 112 (2022).
-
Strobel, G. & Daisy, B. Bioprospecting for microbial endophytes and their natural products. Microbiol. Mol. Biol. Rev. 67, 491–502 (2003).
-
Carter-House, D., Stajich, J. E., Unruh, S. & Kurbessoian, T. Fungal CTAB DNA extraction V1. (2020).
-
lane, D. I. Nucleic acid techniques in bacterial systematics. Nii.ac.jp. https://cir.nii.ac.jp/crid/1370565169361354123 (2024).
-
Stackebrandt, E. R. K. O. Nucleic acids and classification. Handb. New Bacterial Syst. 151 – 94. Nii.ac.jp . https://cir.nii.ac.jp/crid/1573668924449243520 (2025).
-
Dennis, C. & Webster, J. Antagonistic properties of specific group of Trichoderma: production of non-volatile antibiotics. Trans. Br. Mycol. Soc. 75, 41–48 (1971).
-
Etebarian, H. R., Sholberg, P. L., Eastwell, K. C. & Sayler, R. J. Biological control of Apple blue mold with Pseudomonas fluorescens. Can. J. Microbiol. 51, 591–598 (2005).
-
Lillbro, M. Biocontrol of Penicillium roqueforti on grain -a comparison of mode of action of several yeast species. UNSPECIFIED, Uppsala. https://stud.epsilon.slu.se/11884/1/lillbro_m_171013.pdf (Department of Microbiology, 2005).
-
Hsu, S. C. & Lockwood, J. L. Powdered Chitin agar as a selective medium for enumeration of actinomycetes in water and soil. Appl. Microbiol. 29, 422–426 (1975).
-
Majidi, S., Mohammad, R. & Ghezelbash, G. Carboxymethyl-cellulase and filter-paperase activity of new strains isolated from Persian Gulf. Microbiology 1, 8–16 (2010).
-
Sperber, J. The incidence of apatite-solubilizing organisms in the rhizosphere and soil. Aust J. Agric. Res. 9, 778 (1958).
-
Herrera-Téllez, V. I. et al. The protective effect of Trichoderma asperellum on tomato plants against Fusarium oxysporum and Botrytis cinerea diseases involves Inhibition of reactive oxygen species production. Int. J. Mol. Sci. 20, 2007–2007 (2019).
-
Aleahmad, P., Ebrahimi, L., Safaie, N. & Etebarian, H. R. Antagonism of Eucalyptus endophytic fungi against some important crop fungal diseases. Front. Microbiol. 16, 1523127 (2025).
-
Askarne, L. et al. In vitro and in vivo antifungal activity of different bacterial isolates against botrytis Gray mold of tomato. Not Sci. Biol. 16, 12048 (2024).
-
Hassanisaadi, M. et al. Biological control of Pythium aphanidermatum, the causal agent of tomato root rot by two Streptomyces root symbionts. Agronomy 11, 846 (2021).
-
Ebrahimi, L., Tadayon Rad, F. & Lotfi, M. Antagonism of endophytic fungi depends on pathogen and host plant. BioControl 68, 655–668 (2023).
-
Abbasi, S., Safaie, N., Sadeghi, A. & Shams-Bakhsh, M. Streptomyces strains induce resistance to Fusarium oxysporum f. sp. lycopersici race 3 in tomato through different molecular mechanisms. Front. Microbiol. 10, 1505 (2019).
-
Marlatt, M. L., Correll, J. C., Kaufmann, P. & Cooper, P. E. Two genetically distinct populations of Fusarium oxysporum f. sp. lycopersici race 3 in the united States. Plant. Dis. 80, 1336–1342 (1996).
-
Etebarian, H. R., Khairi, A., Roustaei, A., Khodakaramian, G. H. & Aminian, H. Evaluation of Pseudomonas isolates for biological control of charcoal stem rot of melon caused by Macrophomina Phaseolina. Acta Hortic. 761, 157–162 (2007). (In Persian).
-
Paris, R. L., Mengistu, A., Tyler, J. M. & Smith, J. R. Registration of soybean germplasm line DT97-4290 with moderate resistance to charcoal rot. Crop Sci. 46, 2324 (2006).
-
Dorrance, A. E., Coetzee, J. F., McClure, S. A. & Tuttle, N. T. Temperature, moisture, and seed treatment effects on Rhizoctonia Solani root rot of soybean. Plant. dis. 87, 533–538 (2003).
-
Niazi, S. K. et al. GC-MS based characterization, antibacterial, antifungal and anti-oncogenic activity of Ethyl acetate extract of Aspergillus Niger strain AK-6 isolated from rhizospheric soil. Curr. Issues Mol. Biol. 45, 3733–3756 (2023).
